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adp

Atlas of Digital Pathology for Deep Learning [CVPR2019]

bamm_webserver

webserver for BaMMmotif

bammmotif2

Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.

bouncer

cnngeometric_pytorch

CNNGeometric PyTorch implementation

compost

Reimplementation of the compost tool for KOLIMO, but with a little bit better design in mind.

configs

configurations

conque-shell

Run interactive commands inside a Vim buffer

deephistreg

Code used to create the DeepHistReg submission to the ANHIR challenge.

deepsparse

Neural network inference engine that delivers GPU-class performance for sparsified models on CPUs

digipathai

Digital Pathology AI

elastix_interface

elm-narrative-engine

A framework for building interactive fiction style stories in Elm. Play a sample story: https://jschomay.github.io/ene-dev/sample-stories/mystery-of-the-missing-marbles/

greedyfhist

historeg

Framework for registration of sequential digitized histology slices

hsn_v1

HistoSegNet: Semantic Segmentation of Histological Tissue Type in Whole Slide Images (ICCV 2019)

iai_kinect2

Tools for using the Kinect One (Kinect v2) in ROS

lazyjulia

ldaf

Lazy (I am lazy, not the functions) Data Analysis Functions

mailclassify

miit

Repository for the Multi-omics Imaging Integration Toolset. Proper installation scripts, tutorial and documentation will follow soon.

nd064_course_1

opencv.jl

The OpenCV (C++) interface for Julia

ospa

pcdf

pcpc

prosregnet

Deep Learning Registration of the Prostate

prostate_risk_scraper

py-shiny

Shiny for Python