murali-group Goto Github PK

2017-icsb-graphspace-tutorial

Materials for the tutorial on GraphSpace at 2017 ICSB

annotation_prediction

Algorithms for predicting gene and protein annotations, e.g., to the GO and to the HPO.

beehive

A general platform for multiple types of network biology workflows

beeline

BEELINE: evaluation of algorithms for gene regulatory network inference

boolode

Git Repo for simulating Boolean Models

crossplan

The CrossPlan software for systematically planning genetic cross experiments

cygraphspace

A GraphSpace app for Cytoscape

flud

An interactive game to lay out graphs.

graphspace

The interactive graph sharing website.

grn-tutorial

Tutorial on inferring gene regulatory networks from single-cell data

halp

Hypergraph Algorithms Package

icon

Integration using Co-attention across Biological Networks

multi-species-goa-prediction

Software for predicting GO annotations using a multi-species network.

murali-group.github.io

networkx

Official NetworkX source code repository.

pathlinker

Connect the dots in networks.

pathlinker-cytoscape

Cytoscape plugin for PathLinker

pathlinker-pathvisio

A plugin to PathVisio that implements and provides an inteface to the PathLinker algorithm

reglinker

Connect the dots in protein interaction networks ... using regular expressions!

sars-cov-2-network-analysis

Software framework for analysis of SARS-CoV-2 molecular networks

supervised-grns

Supervised inference of gene regulatory networks from single-cell RNA-sequencing data

tox_signaling_networks

Code for building and evaluating toxicant signaling networks.