mult1fractal Goto Github PK
Name: Mike Marquet
Type: User
Company: IIMK
Name: Mike Marquet
Type: User
Company: IIMK
This macro writtin for use with Fiji (ImageJ) processes multiple confocal images of live/dead stained biofilms, outputting the number of bacteria pixels in the red channel and both channels respectively to calculate the viability of the biofilm. It also saves overlay images showing the bacteria which have been detected.
Nextflow/Docker pipelines for "easy use"
list of kits from nanopore
Kraken 2 workflow for testing different kraken parameter in gcloud
first coding steps
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