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Hi there

👋 Hi, I'm Michael Studivan, an Associate Scientist at NOAA's Atlantic Oceanographic and Meteorological Lab (AOML) and UM's Cooperative Institute for Marine and Atmospheric Studies (CIMAS) in Miami, FL http://michaelstudivan.weebly.com

I am a coral disease and 'omics PI for the AOML Coral Program (https://www.aoml.noaa.gov/coral-reef-ecosystems/):

  • 👀 I'm interested in connectivity and resilience of coral reef populations
  • 🔭 I'm currently working on multi-'omics projects to mitigate the spread of Stony Coral Tissue Loss Disease (SCTLD), including transcriptomic responses to infection and treatment, genomic markers of disease resistance, microbial biomarkers for pathogens, and evaluation of disease vectors and treatment approaches
  • 🤝 I'm interested in collaborating on projects to quantify coral resilience to stress, to identify population structure in extreme/marginal environments (mesophotic reefs, urban reefs, etc.), and to help respond to coral disease outbreaks

📫 How to reach me: studivanms (at) gmail (dot) com

Copyright Notice: These documents are protected by various copyright laws. However, I may distribute copies to individuals for personal, research use. Downloading any of the PDF in this repository constitutes your request for a personal copy of the linked article and my delivery of a personal copy. Any other use or distribution is prohibited. These are provided as a means to ensure timely dissemination of scholarly and technical work on a noncommercial basis.

Michael-Studivan's Projects

mcav-cladocopium-annotated-transcriptome icon mcav-cladocopium-annotated-transcriptome

Includes the transcriptome annotation files needed for RNA-Seq analysis of the coral Montastraea cavernosa and algal symbionts of the genus Cladocopium spp. Transcriptomes generated by Misha Matz (https://www.dropbox.com/s/0inwmljv6ti643o/Mcavernosa_genome.tgz) and Sarah Davies (http://sites.bu.edu/davieslab/files/2017/11/CladeC_Symbiodinium_transcriptome.zip)

mcav-microsats icon mcav-microsats

analysis pipeline and template files for microsatellite analysis with M. cavernosa

sctld-resistance-genomics icon sctld-resistance-genomics

Data and scripts associated with genetic analysis of Orbicella faveolata genotypes exposed to stony coral tissue loss disease (SCTLD)

thermal-stress-estuarine-discharge-mcav icon thermal-stress-estuarine-discharge-mcav

Scripts associated with the analysis of whole-transcriptome gene expression profiles for Montastraea cavernosa corals and algal symbionts Cladocopium spp. from southeast Florida exposed to thermal stress and estuarine discharge using in situ and ex situ experiments

transcriptional-plasticity-mesophotic-mcav icon transcriptional-plasticity-mesophotic-mcav

Bioinformatics pipelines and scripts for the manuscript by Studivan and Voss "Transcriptional plasticity of mesophotic corals among natural populations and transplants of Montastraea cavernosa in the Gulf of Mexico and Belize"

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