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msahraeian's Projects

bamsurgeon icon bamsurgeon

tools for adding mutations to existing .bam files, used for testing mutation callers

convert2bed icon convert2bed

Convert common binary and text genomic formats to BED

idp icon idp

IDP is a statistical isoform prediction method to construct possible isoform candidates from the union of long reads and short reads with spliced alignment

metasv icon metasv

MetaSV: An accurate and integrative structural-variant caller for next generation sequencing

somaticseq icon somaticseq

An ensemble approach to accurately detect somatic mutations using SomaticSeq

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