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Qinyun Lin's Projects

circdna icon circdna

Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.

circrna icon circrna

circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

cs-btm icon cs-btm

python implementation of CS-BTM, a semantics-based hot topic detection method based on BTM

csye7200 icon csye7200

This new version of CSYE7200 is to replace the old version.

harvard-bwh-circrna icon harvard-bwh-circrna

This is a nextflow implementation of Circle RNA Analysis for Harvard Medical School, BWH.

lftm icon lftm

Improving topic models LDA and DMM (one-topic-per-document model for short texts) with word embeddings (TACL 2015)

nextflow icon nextflow

working notes about nextflow and some useful scripts

rnaseq icon rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

smrnaseq icon smrnaseq

A small-RNA sequencing analysis pipeline

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