Related Issues (20)
- Realigned output bam TLEN field plus/minus sign when FLAG == 147 HOT 2
- workflow of data pre-processing of RNAseq HOT 6
- feature request: stdin functionality
- Bed file format HOT 1
- Num reads to scan for read length/insert length/mapq
- max_paths_from_root HOT 3
- v2.24 gives "Error loading: libAbra.so", older versions do not HOT 7
- java.lang.IllegalArgumentException: Invalid reference index -1 HOT 1
- Score threshold and content of the printed INFO
- Alternate or duplicate alignment in output HOT 1
- Abra and log4j
- java.lang.OutOfMemoryError: Java heap space HOT 1
- Abra2 creating large (around 100bp) deletions to alignment
- Unknown format conversion exception HOT 1
- build fails on linux
- How to shorten run time HOT 4
- IndelRealigner-parameters vs Abra2-parameters HOT 1
- Specific case that ABRA2 is not realigning correctly
- Abra2-processed bams are incompatible with Strelka2
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from abra2.