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.bashrc

Just a cool looking bash prompt

3-prime-reads-plus

A parallel computational pipeline for analyzing 3'READS+ data

431-classes-2023

Classes repository for PQHS/CRSP/MPHP 431 with Professor Thomas Love at Case Western Reserve University

431-data

Data and R code repository for PQHS/CRSP/MPHP 431 with Professor Thomas Love at Case Western Reserve University

431-labs-2023

PQHS / CRSP / MPHP 431 Labs for Fall 2023

annosnp

Predict the effect of SNPs on genes

apaseq

astral

Accurate Species TRee ALgorithm

asub

A unified array job submitter for LSF, SGE/UGE and Slurm

autocut

bioinformatics-workbook

Bioinformatics Workbook repository

bsa

Bulked-Segregant Analysis using vcf file with or without parents

bsrpipline

Analysis Pipline Of Bulked Segregant RNA-Seq

cmplot

📊 Circular and Rectangular Manhattan Plot

cnrap

Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.

comparative-genomics

Python scripts for gene cluster calling from the output of OrthoFinder

dna-fasta-python

Analyzing DNA sequences in Multi-Fasta Format using Python

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

dokuwiki-template-readthedokus

"Read the Docs" flavored DokuWiki template

genomic-data-science

Genomic data science specialization

gv_oocyte_paisoseqanalysis

Code used to analysis PAIso-Seq data

heatmapper

idep

Integrated Differential Expression and Pathway analysis

idep-rstudio

in-depth-ngs-data-analysis-course

maser

Mapping Alternative Splicing Events to pRoteins

movapa

ollama

Get up and running with Llama 2, Mistral, Gemma, and other large language models.

open-webui

User-friendly WebUI for LLMs (Formerly Ollama WebUI)

openllm

Run any open-source LLMs, such as Llama 2, Mistral, as OpenAI compatible API endpoint in the cloud.