Comments (2)
dewyman
commented on June 16, 2024
Hi Callum,
I set up a Conda environment with Python 3.6 and all of the tests still passed on my machine. I had my colleague run the testing suite as well, and she had similar issues to yours, so I think the problem might be as simple as missing test data files from the repo, or maybe an errant path. I'll look into it.
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callumparr
commented on June 16, 2024
Thank you.
I got the talon.py working in python 3.6, I can see some novel annotations from TALON.
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Related Issues (20)
- Isoforms defined by reads with high fraction A (>0.5) HOT 2
- Abundance and fraction_as not showing properly
- TALON seems to be stuck or I have a least no idea what it is doing. HOT 11
- TALON support for CIGAR strings found in pbmm2 sam files
- new release? HOT 2
- TypeError: stat: path should be string, bytes, os.PathLike or integer, not NoneType HOT 1
- Does TALON database contain the alignments ? HOT 4
- Issue with "Could not retrieve index file" HOT 2
- NameError: name 'vertex_counter' is not defined HOT 6
- Error with installation HOT 1
- Problem with talon_initialize_database HOT 13
- Question - merging TALON databases HOT 1
- Issue with talon filter HOT 4
- internal priming on PCS111 cDNA kit HOT 1
- Antisense after pychopper minimap2. to -uf or not -uf HOT 1
- 'check_database_integrity' error HOT 3
- error when running talon annotator
- What is the meaning of ISM None HOT 2
- Strange error HOT 2
- Multithreading is not working
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