mohanbabu29 Goto Github PK

2020-01-22_introgit

Notes from the introductory Git/Github class taught on 2020-01-22

asd-analysis

Analysis for ASD cross-sectional and longitudinal analyses performed by Nancy Moreno Huizar and Myself.

atac-seq-pipeline

ENCODE ATAC-seq pipeline

autism_precision_medicine

Nature Medicine paper. A Multidimensional Precision Medicine Approach for Autism Subtype Identification.

autismexposome

bios201

Course material for "BIOS 201: Next-generation sequencing and applications"

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

compstats

Code for a workshop on statistical interference using computational methods in Python.

deep-learning-biology

This repository contains the notebooks for the exercise sessions of the VIB Deep Learning for Biology workshop

deseq2

Differential gene expression analysis based on the negative binomial distribution

enhancedvolcano

Publication-ready volcano plots with enhanced colouring and labeling

general_info

hbc-training

intermediate-python

Notes from the Intermediate Python course taught in March 2020

intro-to-conda

A short introductory tutorial to conda environments.

iods-project

Template for the IODS course

learning-data-mining-with-python-second-edition

Learning Data Mining with Python Second Edition by Packt

metagenomic-analysis-workshop

The National Center for Genome Analysis Support (NCGAS) offers a three-day workshop on High Performance Computing (HPC) usage and metagenomic analysis between October 7th to 9th, 2019.

metagenomic-disease-classification-with-deep-learning

This repository accompanies the paper "Multiclass Disease Classification from Microbial Whole-CommunityMetagenomes using Graph Convolutional Neural Networks."

metagenomics-workshop-spring-2020

NCGAS is hosting a metagenomics workshop, focusing on whole genome sequencing metagenome analysis between April 20th to 22nd at Indiana University, Bloominton.

metamap

The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.

metatranscriptome-workshop

Metatranscriptomics Tutorial

methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

metid

Construct database and identify metabolites.

ml-course-vib-2020

mlrepo

mofa2

Multi-Omics Factor Analysis V2 (MOFA+)

mohan

natcomm_tombor_et_al_2020

This repository provides code for single-cell and data analysis used in: "Single cell sequencing reveals endothelial plasticity with transient mesenchymal activation after myocardial infarction" (Nature Communications, Tombor et al. 2020)

notes

STA 141B Notes