Errors on import about ms_deisotope HOT 5 CLOSED

Those indicate that the C-extensions for one or more libraries failed to import. This looks like the brainpy and ms_deisotope C extensions failed to import. Do you know if there were errors during their compilation?

from ms_deisotope.

To get going I was aiming for a plain Python install - the C extensions weren't compiled. I missed the ms_peak_picker and brainpy dependencies, but all good now. Thanks!

from ms_deisotope.

I went back and installed ms_peak_picker, brainpy, and ms_deisotope with C extensions compiled, and I still get an error on import. I'm using Python 2.7.15

>>> import ms_deisotope
No module named composition
(ImportError('No module named composition',), 'averagine')
No module named composition

Update: I also get 'Segmentation fault (core dumped)' from the deconvolute method now.

from ms_deisotope.

That looks like the brainpy C extensions still aren't being found. To confirm, try running python -c "from brainpy._c import composition"

from ms_deisotope.

It seems I messed up my environment along the way. I scratched it and started again, and now it's fine. Thanks for your help Joshua.

from ms_deisotope.