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Mirco Michel's Projects

contact-vis icon contact-vis

Python package for simple protein residue-residue contact map plotting.

cudca icon cudca

CUDA implementation of the initial steps in plmDCA

evalalignments icon evalalignments

Pipeline to evaluate aligments using contact prediction accuracy

gaussdca icon gaussdca

Python implementation of GaussDCA using Cython.

gaussdca.jl icon gaussdca.jl

Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module

nixery icon nixery

Container registry which transparently builds images using the Nix package manager

pcons-fold icon pcons-fold

A pipeline for protein folding using predicted contacts from PconsC and a Rosetta folding protocol.

pconsc icon pconsc

PconsC: Contact prediction using random forrests

pconsc2 icon pconsc2

Improved contact predictions using the recognition of protein like contact patterns.

predictppv icon predictppv

Contact map quality prediction. Predicts positive predictive value of a given amino acid contact map.

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