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2017-01-20_mbp

bedtools2

A powerful toolset for genome arithmetic.

bioconda-recipes

Conda recipes for the bioconda channel.

c1-cage-preview

Technology preview of the C1 CAGE protocol: processing and quality control.

cagescan-clustering

Create CAGEscan clusters from CAGE paired-end reads

deeptools

Tools to process and analyze deep sequencing data.

dsa

deep sea adventure

gmtk_params_notebook

java_rrf_multiclass

obo-utils

Parser for ontology files in .obo format

oscr

Library to work on OSCTables (Order Switchable Column Tables) with R.

punto

pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

pymzml

pymzML - an interface between Python and mzML Mass spectrometry Files

sailfish

Rapid Alignment-free Isoform Quantification from RNA-Seq Reads

scikit-learn

scikit-learn: machine learning in Python

segway

Application for semi-automated genomic annotation.

segzoo

seurat

R toolkit for single cell genomics

sync_paired_end_reads

sync_paired_end_reads is a python tool to synchronise paired-end reads when reads1 or reads2 were modified.

umicount

umicount is a collection of Python scripts which allows to remove and count PCR duplicates from paired-end libraries prepared with unique molecular identifiers