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ml4bio's Projects

casainet icon casainet

CasAINet: accurate and fast detection of Cas proteins via robust large language models and deep attentive neural networks

clear icon clear

CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis

dense-homolog-retrieval icon dense-homolog-retrieval

Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval

e2efold icon e2efold

pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"

e2efold-3d icon e2efold-3d

End-to-End Deep Learning Method for accurate de novo RNA 3D Structure Prediction

ifdeepre icon ifdeepre

large protein language-based deep learning enables interpretable and fast predictions of enzyme commission numbers

rhodesign icon rhodesign

RhoDesign is a structure-to-sequence model for RNA design.

rhofold icon rhofold

RhoFold+: Accurate RNA 3D structure prediction using a language model-based deep learning approach

ribodiffusion icon ribodiffusion

ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models

uspnet icon uspnet

Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model

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