mjsull Goto Github PK
Type: User
mjsull's Projects
amplicon_pipeline
pipeline for creating a trimmed amplicon using a reference
aoc2023
bioconda-recipes
Conda recipes for the bioconda channel.
chromatiblock
Colinear block visualisation tool
clinical_meta_db_download
snakemake pipeline for downloading and formatting a clinical metagenomic database
contiguity
Tool for visualising assemblies.
covbamic
covid_pipe
discoplot
Visualising discordant reads
drawdomains
Script to draw domains produced by CD-Search tool
easyfig
Development version of Easyfig
gwviz
scripts for visalising differences between closely related prokaryotic genomes, changes in a genome over time and recurrent variants between sets of genome pairs.
hapflow
Visualise interstrain recombination from environmental samples.
m.viridis
Script for creating custom trees with etetoolkit
mjsull.github.io
user site
ngpipe
Pipeline for typing Neisseria spp
nmercoveragefinder
Finds median nmer coverage of contigs.
qhery
Identification of mutations in SARS-CoV-2 associated with resistance to treatment.
reducereads
seqfindr
A tool to easily create informative genomic feature plots
smrt_job_submit
Scripts for automatically submitting smrt jobs to the pipeline
spa_typing
Computational method for finding spa types.
utilities
utility scripts
vis_scripts
Compilation of simple visualisation scripts.
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