Markus Joppich's Projects
ACARS v4.0 Development
ACARS v4.0 X-Plane Plugin
Reformat and condense multiple sequence alignments to highlight variability
bioGUI provides install modules for bioinformatic software for users and allows developers to script a GUI for their applications.
Tools for bioGUI (e.g. CWL Parser/argparse2biogui/...)
Our open source benchmarks and code samples
Content ExtRactor and MINEr
Derive a chemokine-chemokine interaction map from (sc)RNA-seq sequencing data
Predict the celltype of a cluster from Seurat FindMarker data
cwl2argparse generates an argparse definition from CWL tool arguments that can be pasted in a Python program and used
Library to visualize protein sequence features in javascript using D3 - From SIB CALIPHO group; neXtProt project
Analyse high-dimensional data in a longitudinal fashion and find similarly regulated sets of genes
Workshop material for GAME-CIBoG workshop
Gardening App for Watering Plants using ESP8266
Geotext extracts country and city mentions from text
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/720458v1
miRExplore toolset stuff
Config files for my GitHub profile.
motus - a tool for marker gene-based OTU (mOTU) profiling
D3 Renderings of Matplotlib Graphics
A general scraper/exporter for matplotlib plots