mjenior Goto Github PK
Name: Matt Jenior
Type: User
Bio: PhD. in Microbiology & Immunology | Multi-omics integration and machine learning analysis
Location: San Bruno
Blog: mattjenior.com
Name: Matt Jenior
Type: User
Bio: PhD. in Microbiology & Immunology | Multi-omics integration and machine learning analysis
Location: San Bruno
Blog: mattjenior.com
Frequently used bioinformatic scripts I generate
BacterIal Genome-Scale Metabolic models for AppLied reverse ecoLogy
Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmons, B.C. Thomas, A.P. Yelton, and J.F. Banfield (2009). Community-wide analysis of microbial genome sequence signatures. Genome Biology, 10: R85
A repo to house the scripts I create and write about in my thesis project blog (http://mjenior.github.io/)
Content Negotiation Proxy for CrossRef DOIs
COBRApy is a package for constraint-based modeling of biological networks
Demonstrating how GitHub and GitKraken work!
DNA foundation modeling from molecular to genome scale
Based on a true story
Implementation of a Hierarchical Mamba as described in the paper: "Hierarchical State Space Models for Continuous Sequence-to-Sequence Modeling"
Mamba SSM architecture
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Personal Website Repo
Code accompanying the book "Machine Learning for Hackers"
The simplest, fastest repository for training/finetuning medium-sized GPTs.
Pat Schloss's repository
Automated GENRE building from gene fastas
Reaction Inclusion by Parsimony and Transcript Distribution
The website for the Schloss Lab at the University of Michigan
General scripts used in the lab. Almost all of them are in core perl, i.e require no modules that don't already come with a perl installation. These script are currently in use by the Lab, so expect full support. This material is based upon work supported by the National Science Foundation under Grant Number EAR-1035955. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
C. difficile metabolic modeling in co-culture with E. faecalis
Repository for StripedHyena, a state-of-the-art beyond Transformer architecture
Official repository for Citation Style Language (CSL) citation styles.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.