mischalundberg Goto Github PK
Name: Mischa Lundberg
Type: User
Company: Institute of Biological Psychiatry
Twitter: MischaLundberg
Location: Roskilde, Denmark
Blog: https://litus-it.de
Name: Mischa Lundberg
Type: User
Company: Institute of Biological Psychiatry
Twitter: MischaLundberg
Location: Roskilde, Denmark
Blog: https://litus-it.de
tools for adding mutations to existing .bam files, used for testing mutation callers
R package for CAUSE
Portable Calculator for CH methylation (PoCalCH) handles .fasta files. The given sequences are cleaned from not needed line breaks and the CH methylation within the given sequences is calculated. As output PoCalCH delivers a Word file and an Excel sheet. All user interactions happen in an easy to use GUI. Its key strength is its tested reliability, portability and time saving during analysis.
Portable Calculator for CH methylation (PoCalCH)
Python Code using CyVCF2 to run custom GWAS models on imputed VCF files
Portable Reverse Complementing (PoRC) tool is an easy to use tool for combining and autonomously reverse-complementing sequences. It guarantees a consistency throughout each evaluation due to a test driven development approach. The ability to run tasks like combining several sequences, cutting the not needed line breaks and reverse complementing the sequences in just one step with the Output saved into several formats, saves researchers valuable time while evaluating data and is the key strength of PoRC. PoRC handles ambiguous and unambiguous DNA sequences with the IUPAC ambiguity code in .fasta or .seq format.
Python code to extract sequences from sequencing (e.g. fasta/bisulfite) files.
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
Introduction to Version Control with Git
Find non-reference processed pseudogene insertions from discordant read pair mappings
Genotype dimension reduction research. Code for manuscript "UMAP reveals cryptic population structure and phenotype heterogeneity in large genomic cohorts"
A comprehensive tutorial about GWAS and PRS
Imapsync is an IMAP transfers tool. The purpose of imapsync is to migrate IMAP accounts or to backup IMAP accounts. IMAP is one of the three current standard protocols to access mailboxes, the two others are POP3 and HTTP with webmails, webmails are often tied to an IMAP server. Upstream website is
tool to Identify TE Insertion Sites in genome
Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end reads with respect to an assembled reference.
LD Score Regression (LDSC)
Create regional association plots from GWAS or meta-analysis
Scripts used for analysis previous to my M1
Data objects for various sets of instruments
Signal-level algorithms for MinION data
Resources for the PGS PRS workshop
PERF is an Exhaustive Repeat Finder
PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
Pydio 8 official repository
RDP Wrapper Library
RDP Wrapper Library
:herb: :bread: Large scale ancestry inference from PCA data
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.