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Name: Mingkai Wang
Type: User
Name: Mingkai Wang
Type: User
Beacon v2 Reference Implementation (API)
Beacon v2 Reference Implementation (Data ingestion tools)
bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.
predict stability change upon mutation
Predicting the effect of mutations on protein stability and protein-protein interaction affinity.
Source code for the ELASPIC REST API: http://elaspic.kimlab.org/api/v1/docs.
Source code for the ELASPIC web server: http://elaspic.kimlab.org.
Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objective function.
Source code for the ELASPIC2 REST API: http://elaspic2-api.proteinsolver.org/docs.
The Functional Analysis through Hidden Markov Models Software and Server
Predict the functional consequences of both coding and non-coding single nucleotide variants (SNVs)
ELIXIR-UK Fellowship – A Fellowship of UK ambassadors to build capacity in RDM for the life sciences
Data intensive science for everyone.
import variants from galaxy datasets to a beacon instance
The program Hydrocluster is designed to determine the position, size and content of hydrophobic, hydrophilic and charged clusters in protein molecules. The program is based on the DBSCAN algorithm.
Fork of biopython for local development
Bits of reusable code to make our lives easier. Follows the *whole sort of general mish-mash* design principle.
Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
Scripts for making a "protein folding energy" dataset.
Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
The code as found in https://proteintools.uni-bayreuth.de/
Automated construction of protein chimeras and their analysis.
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.