mikecuoco Goto Github PK

barcodemate

bioconda-recipes

Conda recipes for the bioconda channel.

bisb-bootcamp-2020-module08

bloodbrainclassifier

cluster_dotfiles

conda-auto-env

Automatically activate a conda environment when entering a folder with an environment.yml file

cookiecutter-compbio

A cookiecutter template for computational biology projects

cookiecutter-computational-biology

A boilerplate for reproducible computational biology projects.

cookiecutter-sequencing-data

A template for sequencing data storage and preprocessing.

curriculum-vitae

My CV

cv

Mike Cuoco's Curriculum Vitae

dotfiles

mike's shell, git, etc config files. also homebrew, migration setup. good stuff.

ece204_project1

Practical understanding of approaches for dimension reduction of multi-dimensional datasets.

environments

General-use computational environments for bioinformatics and computational biology

findmypubs

R scripts to find an authors publications on PubMed and BioRxiv and save to Biblatex

gatk-sv

A structural variation pipeline for short-read sequencing

general_functions

My general-use functions for bioinformatics

jackstraw

implements jackstraw methods in python test for significant PCs and associations between variables and PCs discovered in the data.

kitchen_recipes

linux_setup

script and dotfiles for logging on to a new linux-based computed cluster

michaelcuoco.com

Personal website

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

my-rmd-templates

📄 A selection of minimal examples used to highlight R Markdown templates, as referred to in the "R Markdown Definitive Guide"

myutils

my-utils

pub_tweets

pydeseq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

pyslavseq

Analysis package for human LINE-1 targeted sequencing data obtained with SLAV-Seq protocol

scte

My fork of JiekaiLab/scTE

seurat

R toolkit for single cell genomics

smartseq2

A pipeline for processing single cell RNA-seq data generated with the SmartSeq2 protocol.