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analysis-tools

Code for analyzing data saved by the Open Ephys GUI

cinder

Cinder is a community-developed, free and open source library for professional-quality creative coding in C++.

cookbook-2nd-code

Code of the IPython Cookbook, Second Edition, by Cyrille Rossant, Packt Publishing 2018 [read-only repository]

cusignal

cuSignal - RAPIDS Signal Processing Library

dabest-python

Data Analysis with Bootstrapped ESTimation

ecephys_spike_sorting

Modules for processing extracellular electrophysiology data from Neuropixels probes

ephys2plx

Here are some Matlab .m files and a Matlab mex function used to convert Open Ephys data files to the Plexon .plx file, which can be opened by Plexon Offline-Sorter.

example

Example showing how to run the KlustaSuite on a raw dataset.

gui

Software for electrophysiology data acquisition

headstage

32-channel headstage based on the Intan RHD2132 chip

juce

The JUCE cross-platform C++ framework.

kilosort3

Fast spike sorting with drift correction for up to a thousand channels

klustakwik

Fast software for high-dimensional cluster analysis using the masked EM algorithm for Gaussians mixtures. (Can also be used in "classical" mode for standard hard EM algorithm).

klustakwik2

Fast software for high-dimensional cluster analysis using the masked EM algorithm for Gaussians mixtures

klustaviewa

GUI for spike sorting manual stage in Python

kwiklib

Shared features between the projects (files, statistics, utils...)

mytest

npy-matlab

Experimental code to read/write NumPy .NPY files in MATLAB

phy

phy: interactive visualization and manual spike sorting of large-scale ephys data

phyui

pyecog

For classifying single channel ECoG recordings (iEEG)

pynacollada

pynapple collaborative data analysis (high level python scripts) :tropical_drink:

rhythm

Intan Technologies Rhythm Verilog HDL code

scientific-python-lectures

Lectures on scientific computing with python, as IPython notebooks.

sfr-toolbox

Access Scientific File Formats using standardized syntax in Matlab

sglxarray

Utilities for loading SpikeGLX data in xarray format.

simpleclust

Manual spike clustering software for matlab

spikedetekt

Electrophysiological spike detection for large dense electrode arrays

spikedetekt2

spikeglx

HHMI Neural Recording System