Michael W. Craige's Projects
The open source version of the Amazon EMR Management Guide. You can submit feedback & requests for changes by submitting issues in this repo or by making proposed changes & submitting a pull request.
Network Reverse Engineering through AP inference of Mutual Information
List of AI Residency Programs
Genomics Workflows on AWS
Bioinformatics with Python Cookbook Second Edition, published by Packt
A basic blast pipeline using nextflow
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
The lecture slides for Coursera's Data Analysis class
Data Science and Bioinformatics Tools
The Leek group guide to data sharing
DMPTool version of the DMPRoadmap codebase
DOCK6_Screening_Protocols: Version 6.9 developed and managed by the Rizzo Lab of Stony Brook University
Source repo for Docker's Documentation
Ontology for consent codes and data use requirements
Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455ā2470.e5.
The fastai deep learning library
A service that implements the FHIR standard
Data intensive science for everyone.
The Leek group guide to genomics papers
Google Ads API Client Library for Python
The Google Cloud Developer's Cheat Sheet
Introduction to R and differential gene expression (DGE) analysis
This repository has teaching materials for a 2-day Introduction to RNA-sequencing data analysis workshop using the Orchestra Cluster.
Introduction to bulk RNA-seq
ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran, David Johnson and Philippe Rocca-Serra (Uni. of Oxford).
Learn R Programming, published by Packt
This folder ultimately should contains all my project shown in my Youtube channel.