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airflow-guides

Guides to get up and running with Airflow

altanalyze3

altanalyze3_data

Test data for altanalyze3

anchor

ansible-cwl

Deploy various implementations of CWL

apec

Single cell epigenomic clustering based on accessibility pattern

arbrush

Quick demo of 3d drawing in ARKit using metal + SceneKit. NOTE: This is experimental code!

area

Temporary repository

awesome-coreml-models

Largest list of models for Core ML (for iOS 11+)

bam_processor

testing project

bamsplice

INPUT: sam, bam, gff, gtf, tab-delimited table annotations

bg_removal

bio-cwl-tools

bioinformatic-workflows

CWL workflows for bioinformatic analysis

biowardrobe

biowardrobe-airflow-analysis

BioWardrobe's backend rewritten for Apache Airflow.

biowardrobe-dags

DAGs for BioWardrobe

biowardrobe-migration

Set of tools for migration from BioWardrobe to BioWardrobe-NG

camera_app

cellxgene-gateway

Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

cellxgene_vip

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

chiron

Tools and utilities for running Dockerized metagenomics tools in the Cloud

circos

Build circos plots

clustergrammer

An interactive heatmap visualization built using D3.js

command-line-tools

Experimental repository to include only tested command line tools

command-line-tools-data

Data to run conformance tests from command-line-tools repository

common-workflow-language

Repository for CWL Specifications. Use https://www.biostars.org/t/cwl/ for support.

custom-executor

Custom executor for Rabix Composer

cwl-airflow-benchmark

Scripts and tools to evaluate and test cwl-airflow

cwl-airflow-parser

Package to extend Airflow functionality with CWL v1.0 support