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FabianIsensee avatar FabianIsensee commented on July 17, 2024

Hi,
you just stack the desired output as an additional color channel in 'data'.
Then you make smart use of AppendChannelsTransform. Something like this:

  • 'data' is your image information stacked in c with your target output]
  • do all spatial transformations, no color transformation!
  • use AppendChannelsTransform to move the channel with your target into the key 'seg'. 'seg' will be created automatically (if will give a warning which you can ignore)
  • now do color augmentations if applicable (brightness, contrast etc)

voila. That should do it =)

Best,
Fabian

from batchgenerators.

adler-j avatar adler-j commented on July 17, 2024

Thank you very much, this makes perfect sense!

from batchgenerators.

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