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Jianfeng's Projects

bio-dockers icon bio-dockers

:whale: Bio-dockers: dockerized bioinformatic tools

bowtie2 icon bowtie2

A fast and sensitive gapped read aligner

bracer icon bracer

BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data

bs4dash2 icon bs4dash2

Bootstrap 4 shinydashboard using AdminLTE3

btrbk icon btrbk

Tool for creating snapshots and remote backups of btrfs subvolumes

bwa icon bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

cicero icon cicero

CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

configr icon configr

Implements the JSON, INI, YAML and TOML parser, for R setting and writing of configuration file.

evalsvcallers icon evalsvcallers

Evaluate the performances (precision and recall) of structural variation (SV) callers

freebayes icon freebayes

Bayesian haplotype-based polymorphism discovery and genotyping.

ggtree icon ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

goconfig icon goconfig

Package goconfig is a fully functional and comments-support configuration file (.ini) parser.

gvmap icon gvmap

[R package] An Improved Function to Plot Heatmap of Genomic Data

hamlet icon hamlet

Comprehensive diagnostics of acute myeloid leukemia by whole transcriptome RNA sequencing

htslib icon htslib

C library for high-throughput sequencing data formats

immunarch icon immunarch

An R Package for Fast and Effortless Analysis of Large-Scale Immune Repertoire Data

imrep icon imrep

ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.

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