Comments (1)
Which script did you use exactly? If you use this one which only uses ProstT5-encoder + CNN to predict 3Di, you should get predictions for all proteins up to the point where your GPU runs out of memory (but this should not quit silently but throw an exception, so you should see why it fails).
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Related Issues (14)
- Issue downloading model weights HOT 1
- Translation result is unexpected! HOT 1
- Foldseek not liking generate_foldseek_db.py output TSVs HOT 6
- 'T5Tokenizer' object has no attribute 'to' HOT 1
- Dataset version with IDs? HOT 11
- Problem while trying to convert AA to 3Diaa HOT 2
- computing residue logits from 3Di input HOT 5
- Converting the AA sequences to 3Di and getting the output in PDB format for Foldseek input? HOT 4
- Base Roundtrip Accuracy HOT 7
- translate.py documentation HOT 1
- AttributeError: 'T5EncoderModel' object has no attribute 'full' HOT 4
- Back Translate 3Di Tokesn to PDB Format HOT 1
- ProstT5 for tasks like AMP classification or protein localization. Also protT5 xxl results. HOT 1
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