anvi-rename-bins_ Config Error about anvio HOT 5 CLOSED

Hey @nahbergo, I just tested your command and it seems to be working fine in anvio-dev. Sorry, I'm not sure how you ended up here.

But I realize there is a problem with filtering based on completion and I'll look into that.

from anvio.

Hi @meren,
thank you for the reply.

I refined 347 bins. I thought it was the large amount of bins.
But I tested the same command for another group of samples with coassembly (249 bins) and got the same error.
The command generates the report file with the renamed MAGs but does not filter the MAGs.

I hope you can help me.

rename.txt

from anvio.

If you hadn't removed the the issue template and leave all the questions it requested you to respond unanswered, I may have had some suggestions.

from anvio.

If you hadn't removed the the issue template and leave all the questions it requested you to respond unanswered, I may have had some suggestions.

Sorry I do not understand. What questions were not answered? Yes, I accept suggestions.

from anvio.

Hey @nahbergo, this error does not make any sense to me unfortunately. My only suggestion is to try running the same command in anvio-dev, and we may be able to solve the remaining issues quickly if you run into a problem in avnio-dev (installation instructions for anvio-dev are on anvio.org).

from anvio.