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awesome-shell

A curated list of awesome command-line frameworks, toolkits, guides and gizmos. Inspired by awesome-php.

awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

basic

BASIC: BCR and TCR assembly from single cell RNA-seq

books

books

bracer

BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data

cdhit

Automatically exported from code.google.com/p/cdhit

cellranger

10x Genomics Single Cell 3' Gene Expression and VDJ Assembly

cerosaletti_linsley

cloudman

Easily create and manage compute clusters on any Cloud.

conservedidentification

deepcat

Deep Learning Method to Identify Cancer Associated TCRs

deeplearningproject

The deep learning project for Course Deep Learning hosting by CHE, Wanxiang

dragonstar2019

e-books

IT e-books

ebsmount

Automatically mount EC2 EBS (Elastic Block Storage) devices

falco

A quick and flexible single-cell RNA-seq processing framework on the cloud

galaxy

Data intensive biology for everyone.

hex

(Halted, unfinished) HLA Extractor - a simple HLA typing tool.

igor

IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:

immcantation

immdeep

immunarch

immunarch: An R Package for Painless Analysis of Large-Scale Immune Repertoire Data

immunedb

ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data

imonitor

This script use to analyze the immune repertoire sequenced by high throughtput sequencing

ismart

Highly specific clustering of T cell receptor CDR3s

linuxtools_rst

Linux工具快速教程

mhc

migmap

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

navi

An interactive cheatsheet tool for the command-line

ncov