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.emacs.d

🎉 Personal GNU Emacs configuration

2016-04-06-dib-git-intro

Teaching Demo

2016-04-13-dib-git-intermediate

bassovac

Improved Bayesian inversion somatic caller

biopieces

Automatically exported from code.google.com/p/biopieces

breakdancer

SV detection from paired end reads mapping

bte

Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit

cl-gentle-intro

Common Lisp: A Gentle Introduction to Symbolic Computation

covid-19-dream

COVID-19 DREAM Challenge

cv

Curriculum Vitae

data-connect

Standard for describing and searching biomedical data developed by the Global Alliance for Genomics & Health.

data-munging-with-python

This repository contains all of the Python scripts, input files, and output files associated with the training class, Data Munging with Python.

data-science-from-scratch

code for Data Science From Scratch book

data_visualization_examples

People keep asking me in interviews, "Can you create publishable figures?" or "What, _exactly_, was *your* contribution to this paper??"

data_wrangling

A collection of possibly useful scripts assembled over a five-and-a-half year period at the modENCODE DCC and two-and-a-half years at the ICGC DCC

dcs-bwt-compressor

Automatically exported from code.google.com/p/dcs-bwt-compressor

dive-into-machine-learning

Dive into Machine Learning with Python Jupyter notebook and scikit-learn!

dsp_user_ed

A working space for developing a master vault of template notebooks for DSPs User Ed

encode-db-dump

Scripts for pulling data to encode format.

foundations-for-analytics-with-python

genomevip

grocsvs

Genome-wide reconstruction of complex structural variants

gt-download-upload-wrapper

This tool is used to monitor and make gt-download more robust. To be use primarily withing SeqWare workflows

hicplotter

“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

hotspot3d

3D hotspot mutation proximity analysis tool

icgc-dcmwg

Code relevant to ICGC Data Coordination and Management Working Group

jsdatav.is-source

Source code for jsDataV.is visualizations

json_to_paths

Distill a JSON document into a collection of paths both for 'jq' and 'xpath'

kjh-vita

A simple LaTeX template that I use for my Vita.

linkml

Linked Open Data Modeling Language