Comments (5)
Ok, I now export a Hamming
distance that is distinct from the one exported by Distances
. Not super satisfied (this requires to do StringDistances.Hamming()
when loading both Distances
and StringDistances
), but that's better than type piracy.
from stringdistances.jl.
from stringdistances.jl.
Something simple like:
compare("GACT", "CGATTGCAATGCTA", Partial(Hamming()))
or
findall(s, itr, Partial(Hamming()), min_score = 0.9)
An example use case would be as a first pass in PCR primer design, where a hamming might be more appropriate than levenshtein or other metric.
from stringdistances.jl.
The issue is that Hamming
is already defined in Distances
and so defining it on Strings
is type piracy.
from stringdistances.jl.
I'm a bit new to Julia, but can you simply name the function something else? The name isn't important, only what it does. Something like hammingstr
or hamming2
etc.
from stringdistances.jl.
Related Issues (20)
- Phonetic distance HOT 1
- Tag a new version HOT 1
- `Base.findmin(s1, s2, dist::Partial)`
- bug in `DamerauLevenshtein` HOT 9
- `compare` with `Partial` distances gives negative answers HOT 4
- DamerauLevenshtein() vs Levenshtein() why the same distance ? HOT 1
- Speeding up qgram distances with pre-counting of qgrams HOT 9
- TagBot trigger issue HOT 5
- Simpler QGramDistances implementation and prep for general dictionaries and iterators HOT 5
- `Partial` only looks at substrings of the same length... HOT 1
- pairwise not working with StringDistances HOT 3
- unexpected behavior when computing distance with an array HOT 2
- Non-strings HOT 4
- The value of "compare" is probably wrong. HOT 1
- Feature Request: Parallel processing HOT 4
- incremental compilation may be fatally broken for this module HOT 5
- Julia v1.7 Jaro() doesn't work HOT 2
- incomplete readme documentation HOT 1
- NaN (or ArgumentError) from QGram distances for short strings HOT 4
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from stringdistances.jl.