"ktest" file error - due to file naming convention about kemet HOT 5 CLOSED

I forgot that I have reboot my virture machine. HAHAHA!
My problems have solved. THANK YOU!
I believe this program is a powerful and convenient tool!

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Hi,

I believe the error could be due to not adding a properly named eggnog annotation file in the KEGG_ANNOTATION folder.

In the above case, it should be called x23.emapper.annotations (i.e. the eggnog output extension, with the name of your genome/MAG of choice before it).

Let me know if maybe renaming files solves it!

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$./kemet.py genomes/x23.fna -a eggnog --skip_hmm

Traceback (most recent call last):
File "/root/KEMET/./kemet.py", line 11, in
from reframed import load_cbmodel, save_cbmodel
ModuleNotFoundError: No module named 'reframed'

I added a eggnog annotation file named x23.emapper.annotations in the KEGG_ANNOTATION folder.
But I still met a new error

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Great, so I believe the first one should be considered as solved.

from reframed import load_cbmodel, save_cbmodel
ModuleNotFoundError: No module named 'reframed'

^ this states that you're not using a conda environment with Reframed installed, as stated in the installation info:
You could solve this by properly following the indications, i.e. running pip install reframed on your terminal, with the kemet conda environment active.

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Good! Glad all was sorted out easily.

And thanks a lot for the kind words, hope more people will find it useful as well!

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