mattbixley Goto Github PK

2020-02-17-otago

advent_of_code

Advent of Code Solutions - cloned to 2021 but I have done others

baker

Bread Recipes

barkley_plots

quick viz to track progress of the annual Barkley 100+ mile race

bioinformatics-spring-school-2020

ckanext-dashboard

Organize views in a single dashboard

covid19

COVID19 Dashboard with emphasis on New Zealand (maybe)

deepslide

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

deepslide-svs-wsi-to-jpeg-patch-generator

Tool for splitting an image at a specific resolution from a .SVS into .JPEG tiles.

eri-intro

AgResearch eResearch Infrastruture Demo

healthmap

Mapping some New Zealand Health Stats

itra

ITRA GPS and Results manipulation

maltrail

markdown_lessons

Introductory Markdown

merrimanlab.github.io

mypositconf

POSIT devop workshop

nswtopo

A vector topographic mapping tool, with layers available for NSW and Tasmania. Pre-built maps also available:

o-rank

Orienteering Rankings with Mixed Models

organization-genomics

otagocarpentries.github.io

otagouniversityposter

Using Brent Thornes Base Posters and converting to Otago University Formats

penguin-project

photogallery

GitHub Gallery. A simple tool to show all images in a folder. Only requirement is a GitHub account. Forked from mikelothar/github-gallery

polls

Mucking around with ggplot2, xkcd and the election

population-density-maps

Using Kontur Population and Rayshader package in R

posterdown

Use RMarkdown to generate PDF Conference Posters via HTML or LaTeX

postotago

Otago University Posters in Markdown

quarto-workshop

r4biochem

R Lessons for the University of Otago Biochemistry Department

repo-badges

:star: Use repo badges (build passing, coverage, etc) in your readme/markdown file to signal code quality in a project.