Comments (2)
Without details about the implementation, I cannot precisely know what is going on.
However, in case you are using GzDecoder from the flate2
crate, the described error can in fact occur. Many 'fastq.gz' files are multi-member files which makes it necessary to use MultiGzDecoder instead. I've hit this problem earlier as well, since I didn't know about this. Could this be the problem in your case?
from seq_io.
Hi,
Thanks a lot for your reply and my apologies for not giving you more details!
You have indeed identified my mistake: I was using GzDecoder instead of GzDecoder. Now all files are correctly parsed.
best,
Romain
from seq_io.
Related Issues (12)
- parallel reading 10G fasta/fastq file HOT 5
- Open to a PR for impl Display (or Debug) etc.? HOT 1
- An error in record.rs in core HOT 2
- Issue when get the size of sequence length in reference genome file HOT 1
- Future incompatibility with buf_redux HOT 2
- buf redux warning can be removed HOT 1
- Depends on old crossbeam HOT 1
- Reading gz files? HOT 3
- Whole Genome Alignments HOT 1
- write_* takes ownership of Writer HOT 3
- Release of 0.4.0 HOT 4
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