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advanced-sequencing-and-genome-assembly

Perform a de-novo assembly of an unknown organism and report workflows and findings. Illumina PE 101x2, insert size 350bps +/- 50, PacBio long reads. Develop a Java program with a GUI to vizualise and report quality metrics for the best three assembly attempts.

java-fasta-gtf-reader

Java project for MSc Applied Bioinformatics at Cranfield University. Java program for gene models visualisation using gene structures from GTF annotation and FASTA files. User can choose a file, display its information, calculate basic statistics, display and highlight exons (with text and graphically).

java-genetic-optimisation-algorithm

Implementation of the Richard's Dawkin's "Weasel" program with Java. Starting with a set of random letters, evolve the phrase "METHINKS IT IS LIKE A WEASEL".

machinelearning_r_meat-freshness

Machine Learning project for MSc Applied Bioinformatics (Cranfield University). Analyse data from meat (enose, taste and semell, etc.) to compared different regression and classification methods. The aim is to detect if the meat is rottent, semi-rottent or fresh.

mapoptics2.0

rest-api-service-for-variant-data

Data integration and interaction network project during MSc Applied Bioinformatics (Cranfield University). REST API service for variant data of eukaryotic genomes storing and sharing. Relational database (SQLITE), tool to parse VCF file data and populate data base. REST API server deployable on Node.js to calculate statistics of VFC file.