Marco Meola's Projects
Discover and install useful RStudio addins
Shiny tips & tricks for improving your apps and solving common problems
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
A curated list of awesome R frameworks, libraries and software.
add usearch to biobackery/workflows
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
This is a docker image for 16S microbiome analyses in cheeses and dairy products
Genome mapping, consensus generating, variant calling and annotation tool for SARS-COV-2
Accurate sample inference from amplicon data with single nucleotide resolution
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DECIPHER.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DECIPHER.
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
A dockerfile for building a docker with all needed libraries for SeekDeep
An R meta-package for the analysis of Next Generation Sequencing data
Shiny app for modelling bacterial growth kinetics
A series of small Biopython scripts for downloading sequence data off NCBI's Genbank.
A manually curated database of human gut metabolic modules.
upload your google location history data and visualize it as a heatmap
HTML Widgets for R
Reads CIGAR strings from bam files and parses them into relevant features for microbial prediction.
A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
Markdown supported languages for syntax highlighting
Allan Lab website
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
Mulled - Automatized Containerized Software Repository
Scripts to download genomes from the NCBI FTP servers