Comments (12)
paulinus
commented on June 8, 2024
It looks like subprocess is not finding the cmake command. Is cmake installed?
from opensfm.
rowanblaik
commented on June 8, 2024
You're right. Thank you very much for the quick reply. I installed cmake via brew and the build script runs. It flags up this error about csfm now:
MACOSX_RPATH is not specified for the following targets: csfm
Running the example gives this:
Extracting focal lengths for image 01.jpg Extracting focal lengths for image 02.jpg Extracting focal lengths for image 03.jpg Traceback (most recent call last): File "/Users/rowan/Desktop/OpenSfM-master/bin/detect_features", line 10, in <module> from opensfm import features File "/Users/rowan/Desktop/OpenSfM-master/opensfm/features.py", line 12, in <module> import csfm ImportError: No module named csfm
from opensfm.
paulinus
commented on June 8, 2024
The MACOSX_RPATH warning is normal. It should be no problem. Could you paste the complete build log?
from opensfm.
rowanblaik
commented on June 8, 2024
Configuring...
-- The C compiler identification is AppleClang 6.1.0.6020049
-- The CXX compiler identification is AppleClang 6.1.0.6020049
-- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/cc
-- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/c++
-- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Try OpenMP C flag = [ ]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP C flag = [/openmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP C flag = [-Qopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP C flag = [-openmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP C flag = [-xopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP C flag = [+Oopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP C flag = [-qsmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP C flag = [-mp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP CXX flag = [ ]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP CXX flag = [/openmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP CXX flag = [-Qopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP CXX flag = [-openmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP CXX flag = [-xopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP CXX flag = [+Oopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP CXX flag = [-qsmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP CXX flag = [-mp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Could NOT find OpenMP (missing: OpenMP_C_FLAGS OpenMP_CXX_FLAGS)
-- Looking for dgemm_
-- Looking for dgemm_ - found
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE
-- A library with BLAS API found.
-- Looking for cheev_
-- Looking for cheev_ - found
-- A library with LAPACK API found.
-- A library with BLAS API found.
-- Found AMD library: /usr/local/lib/libamd.a
-- Found AMD header in: /usr/local/include
-- Found CAMD library: /usr/local/lib/libcamd.a
-- Found CAMD header in: /usr/local/include
-- Found COLAMD library: /usr/local/lib/libcolamd.a
-- Found COLAMD header in: /usr/local/include
-- Found CCOLAMD library: /usr/local/lib/libccolamd.a
-- Found CCOLAMD header in: /usr/local/include
-- Found CHOLMOD library: /usr/local/lib/libcholmod.a
-- Found CHOLMOD header in: /usr/local/include
-- Found SuiteSparseQR library: /usr/local/lib/libspqr.a
-- Found SuiteSparseQR header in: /usr/local/include
-- Found Intel Thread Building Blocks (TBB) library: /usr/local/lib/libtbb.dylib, assuming SuiteSparseQR was compiled with TBB.
-- Found Intel Thread Building Blocks (TBB) Malloc library: /usr/local/lib/libtbbmalloc.dylib
-- Found SuiteSparse_config library: /usr/local/lib/libsuitesparseconfig.a
-- Found SuiteSparse_config header in: /usr/local/include
-- Did not find METIS library (optional SuiteSparse dependency)
-- Found SuiteSparse: TRUE (found version "4.2.1")
-- Found Eigen: /usr/local/include/eigen3 (found version "3.2.4")
-- Found ceres: /usr/local/lib/libceres.dylib
-- Found Gflags: /usr/local/include
-- Found Glog: /usr/local/include
-- Could NOT find Boost
-- Found PythonLibs: /usr/lib/libpython2.7.dylib (found version "2.7.6")
-- Found PythonInterp: /usr/bin/python2.7 (found version "2.7.6")
-- Found NumPy: version "1.9.2" /usr/local/lib/python2.7/site-packages/numpy/core/include
-- Configuring done
CMake Warning (dev):
Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake
--help-policy CMP0042" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
MACOSX_RPATH is not specified for the following targets:
csfm
This warning is for project developers. Use -Wno-dev to suppress it.
-- Generating done
-- Build files have been written to: /Users/rowan/desktop/OpenSfM-master/cmake_build
Compiling extension...
Scanning dependencies of target vl
Scanning dependencies of target akaze
Scanning dependencies of target mv
[ 2%] [ 4%] Building CXX object CMakeFiles/akaze.dir/third_party/akaze/lib/fed.cpp.o
Building CXX object CMakeFiles/akaze.dir/third_party/akaze/lib/AKAZE.cpp.o
[ 6%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/aib.c.o
In file included from /Users/rowan/desktop/OpenSfM-master/opensfm/src/third_party/akaze/lib/fed.cpp:33:
In file included from /Users/rowan/desktop/OpenSfM-master/opensfm/src/third_party/akaze/lib/fed.h:22:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/vector:265:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__bit_reference:15:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/algorithm:628:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/memory:604:
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/iterator:341:10: fatal error: '__debug' file not found
#include <__debug>
^
[ 8%] Building CXX object CMakeFiles/mv.dir/third_party/libmv/multiview/fundamental.cc.o
In file included from /Users/rowan/desktop/OpenSfM-master/opensfm/src/third_party/akaze/lib/AKAZE.cpp:23:
In file included from /Users/rowan/desktop/OpenSfM-master/opensfm/src/third_party/akaze/lib/AKAZE.h:12:
In file included from /Users/rowan/desktop/OpenSfM-master/opensfm/src/third_party/akaze/lib/AKAZEConfig.h:12:
In file included from /usr/local/include/opencv2/opencv.hpp:47:
In file included from /usr/local/include/opencv2/core/core.hpp:56:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/algorithm:628:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/memory:604:
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/iterator:341:10: fatal error: '__debug' file not found
#include <__debug>
^
In file included from /Users/rowan/desktop/OpenSfM-master/opensfm/src/third_party/libmv/multiview/fundamental.cc:21:
In file included from /Users/rowan/desktop/OpenSfM-master/opensfm/src/third_party/libmv/multiview/fundamental.h:24:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/vector:265:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__bit_reference:15:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/algorithm:628:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/memory:604:
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/iterator:341:10: fatal error: '__debug' file not found
#include <__debug>
^
[ 10%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/array.c.o
[ 12%] 1 error generated.
Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/covdet.c.o
make[2]: *** [CMakeFiles/akaze.dir/third_party/akaze/lib/fed.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
[ 14%] Building CXX object CMakeFiles/mv.dir/third_party/libmv/multiview/projection.cc.o
In file included from /Users/rowan/desktop/OpenSfM-master/opensfm/src/third_party/libmv/multiview/projection.cc:21:
In file included from /Users/rowan/desktop/OpenSfM-master/opensfm/src/third_party/libmv/multiview/projection.h:24:
In file included from /Users/rowan/desktop/OpenSfM-master/opensfm/src/third_party/libmv/numeric/numeric.h:28:
In file included from /usr/local/include/eigen3/Eigen/Cholesky:4:
In file included from /usr/local/include/eigen3/Eigen/Core:28:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/complex:247:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/sstream:174:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/ostream:131:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/ios:216:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__locale:15:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/string:439:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/algorithm:628:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/memory:604:
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/iterator:341:10: fatal error: '__debug' file not found
#include <__debug>
^
[ 16%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/dsift.c.o
/Users/rowan/desktop/OpenSfM-master/opensfm/src/third_party/vlfeat/vl/dsift.c:265:26: warning: using floating point absolute value function 'fabsf' when argument is of integer
type [-Wabsolute-value]
*kerIter++ = (1.0F - fabsf(x) / binSize) *
^
/Users/rowan/desktop/OpenSfM-master/opensfm/src/third_party/vlfeat/vl/dsift.c:265:26: note: use function 'abs' instead
*kerIter++ = (1.0F - fabsf(x) / binSize) *
^~~~~
abs
1 warning generated.
[ 18%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/fisher.c.o
[ 20%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/generic.c.o
[ 22%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/getopt_long.c.o
[ 24%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/gmm.c.o
1 error generated.
make[2]: *** [CMakeFiles/akaze.dir/third_party/akaze/lib/AKAZE.cpp.o] Error 1
make[1]: *** [CMakeFiles/akaze.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 26%] Building CXX object CMakeFiles/mv.dir/third_party/libmv/multiview/five_point.cc.o
In file included from /Users/rowan/desktop/OpenSfM-master/opensfm/src/third_party/libmv/multiview/five_point.cc:21:
In file included from /Users/rowan/desktop/OpenSfM-master/opensfm/src/third_party/libmv/multiview/five_point.h:24:
In file included from /Users/rowan/desktop/OpenSfM-master/opensfm/src/third_party/libmv/base/vector.h:31:
In file included from /usr/local/include/eigen3/Eigen/Core:28:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/complex:247:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/sstream:174:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/ostream:131:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/ios:216:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__locale:15:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/string:439:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/algorithm:628:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/memory:604:
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/iterator:341:10: fatal error: '__debug' file not found
#include <__debug>
^
[ 28%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/hikmeans.c.o
[ 30%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/hog.c.o
[ 32%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/homkermap.c.o
[ 34%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/host.c.o
[ 36%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/ikmeans.c.o
[ 38%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/imopv.c.o
[ 40%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/imopv_sse2.c.o
[ 42%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/kdtree.c.o
[ 44%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/kmeans.c.o
1 error generated.
make[2]: *** [CMakeFiles/mv.dir/third_party/libmv/multiview/projection.cc.o] Error 1
make[2]: *** Waiting for unfinished jobs....
[ 46%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/lbp.c.o
[ 48%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/liop.c.o
[ 50%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/mathop.c.o
[ 52%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/mathop_avx.c.o
[ 54%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/mathop_sse2.c.o
[ 56%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/mser.c.o
[ 58%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/pgm.c.o
[ 60%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/quickshift.c.o
/Users/rowan/desktop/OpenSfM-master/opensfm/src/third_party/vlfeat/vl/pgm.c:236:18: warning: comparison of constant 65536 with boolean expression is always false
[-Wtautological-constant-out-of-range-compare]
if(! max_value >= 65536) {
~~~~~~~~~~~ ^ ~~~~~
1 warning generated.
[ 62%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/random.c.o
[ 64%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/rodrigues.c.o
[ 66%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/scalespace.c.o
[ 68%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/sift.c.o
[ 70%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/slic.c.o
[ 72%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/stringop.c.o
[ 74%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/svm.c.o
[ 76%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/svmdataset.c.o
[ 78%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/vlad.c.o
Linking C static library libvl.a
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: libvl.a(mathop_avx.c.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: libvl.a(mathop_avx.c.o) has no symbols
[ 78%] Built target vl
1 error generated.
make[2]: *** [CMakeFiles/mv.dir/third_party/libmv/multiview/five_point.cc.o] Error 1
1 error generated.
make[2]: *** [CMakeFiles/mv.dir/third_party/libmv/multiview/fundamental.cc.o] Error 1
make[1]: *** [CMakeFiles/mv.dir/all] Error 2
make: *** [all] Error 2
Building package
running build
running build_py
creating build
creating build/lib
creating build/lib/opensfm
copying opensfm/__init__.py -> build/lib/opensfm
copying opensfm/context.py -> build/lib/opensfm
copying opensfm/dataset.py -> build/lib/opensfm
copying opensfm/exif.py -> build/lib/opensfm
copying opensfm/features.py -> build/lib/opensfm
copying opensfm/geo.py -> build/lib/opensfm
copying opensfm/geotag_from_gpx.py -> build/lib/opensfm
copying opensfm/io.py -> build/lib/opensfm
copying opensfm/matching.py -> build/lib/opensfm
copying opensfm/mesh.py -> build/lib/opensfm
copying opensfm/multiview.py -> build/lib/opensfm
copying opensfm/reconstruction.py -> build/lib/opensfm
copying opensfm/sensors.py -> build/lib/opensfm
copying opensfm/transformations.py -> build/lib/opensfm
copying opensfm/video.py -> build/lib/opensfm
creating build/lib/opensfm/data
copying opensfm/data/sensor_data.json -> build/lib/opensfm/data
from opensfm.
paulinus
commented on June 8, 2024
The problem seems to be a missing __debug header in Command Line Tools 6.3. In this thread people propose to install Xcode to solve the issue, or wait for Apple to fix CLT
from opensfm.
rowanblaik
commented on June 8, 2024
Thanks for the confirmation. I'll wait for Apple to fix it then try again
from opensfm.
slhck
commented on June 8, 2024
There's an Apple software update available now that should fix it.
from opensfm.
sahilshah
commented on June 8, 2024
@slhck I am getting this exact same error. However, even after the Applt CLT update this isn't fixed. Any ideas? Thanks!
from opensfm.
sahilshah
commented on June 8, 2024
@rowanblaik @slhck I think this problem is due to the absence of operating code in 2 files in the 3rd party libs. I added a function that effectively did nothing to the 2 files causing this error and then I was able to build.
from opensfm.
rowanblaik
commented on June 8, 2024
Did the built binary function properly? Could you guide me how to achieve that too please?
from opensfm.
sahilshah
commented on June 8, 2024
It did function properly. However, I had to build boost from source as well because brew did not build libboost_python for some reason even though I used appropriate flags.
You can add something like void test(){ int x; x = 0; } in both the files that are not getting compiled for libmv and libvl. I read somewhere on the internet that its because the files don't have any operating code.
from opensfm.
rowanblaik
commented on June 8, 2024
Just a quick note to say that the build is working with the recent CLT update. Many thanks!
from opensfm.
Related Issues (20)
- Error data and correlation similar to Metashape matrix HOT 1
- Install Error with Debian
- Consider updating to a newer Sphinx and relaxing the constraints HOT 1
- Consider tagging a new release
- opensfm/test/test_commands.py::test_run_all doesn't pass with matplotlib 3.8.0
- Camera::PixelToNormalizedCoordinatesMany returns incorrect value? HOT 1
- Camera Positions from R, t vector in reconstruction.json HOT 1
- 360 camera feature point coordinate
- Obtaining a more crisp point cloud HOT 3
- Inquiry Regarding Representation of Position and Orientation Data in exif_overrides.json HOT 1
- Any suggestions to improve the speed of reconstructing 360 images？
- Parsing tracks.csv
- ValueError: Unable to determine Axes to steal space for Colorbar. Either provide the *cax* argument to use as the Axes for the Colorbar, provide the *ax* argument to steal space from it, or add *mappable* to an Axes.
- Error when building using wsl ubuntu
- GPU Accelerated Feature Matching HOT 1
- merge sub-point cloud
- Using OpenSFM with a telescopic lens
- Unable to run, attempted to make changes but still failed HOT 2
- Wrong Flask resource paths in annotation_gui_gcp HOT 1
- cannot import name 'pybundle' from partially initialized module 'opensfm' (most likely due to a circular import) HOT 3
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from opensfm.