maojrs Goto Github PK

1d_euler_diffeos

1D Euler eqs. with different equation of state for air-plastic-water interface

1deuler

One dimensional euler equations with three interfaces, air, plastic and water. Riemann solver used is HLLC

2d_acoustics_interface

2D Acoustics equations with air-polystirene-water interface for TBI

3daxsymeuler

amrclaw

AMR version of Clawpack

apps

Repository of applications of Clawpack and related codes

bbb_experiment

3D Computational experiment of blood-brain-barrier disruption experiment. It employs 2D axisymmetric Euler eqs with a Tammann EOS and new algorithms for the interface coupling.

bio-pipeline

Sample Version Control Repository for Tufts SWC Boot Camp

classic

Classic single-grid Fortran routines

clawpack

Package for solving hyperbolic systems of partial differential equations

clawutil

General utility programs

deepcme

deeprd

Tools for reaction dynamics and deep learning in a python package

diep_lecture

doc

General Clawpack documentation and main wiki pages

game_theory_kinetics

interface_euler_amr

Code to accompany paper in numerical methods for interface coupling of compressible and almost incompressible media.

ipynotebooks

Collection of IPython notebooks of Riemann solvers and scientific computing with python

jsanimation

Playing with frame-based Javascript animations

jupyter-edu-book

Teaching and Learning with Jupyter

msmrd

A general framework to couple Markov state models (MSM) of molecular kinetics with particle-based reaction-diffusion (RD) simulations.

multiscalerd

Coupling particle-based reaction-diffusion simulations with reservoirs mediated by reaction-diffusion PDEs.

pinns

Physics Informed Deep Learning: Data-driven Solutions and Discovery of Nonlinear Partial Differential Equations

pyclaw

PyClaw is a Python-based interface to the algorithms of Clawpack and SharpClaw. It also contains the PetClaw package, which adds parallelism through PETSc.

pyemma

Python API for Emma's Markov Model Algorithms

pyemma_tutorials

How to analyze molecular dynamics data with PyEMMA

reveal.js

Store reveal.js presentations

riemann

One place for all Clawpack-style Riemann solvers

riemann_book

Book in progress to illustrate Riemann solvers in Jupyter notebooks.

riemann_nb

Updated repository of riemann jupyter notebooks