manyu90 Goto Github PK

academic-kickstart

automatic_html_reports

Auto generating HTML (scientific) reports for a large number of (experiments) pages using Jinja2 for templating

chip-seq-pipeline

Pipeline to process Chip Seq data with additional steps added to remove Chr M and P (in plants)

city-locator

Locate Major cities within a specific distance range from you (Geodesic Distance: Calculated with the Haversine formula using your local coordinates and lookup from a database)

convmotif

Generating pwms and visualizing them from trained CNNs on genomics sequences

cs224d_project

deeplift

Public facing deeplift repo

eli5

A library for debugging/inspecting machine learning classifiers and explaining their predictions

genomelake-1

Simple and efficient access to genomic data for deep learning models.

hofstadter-butterfly

Simulating the energy levels of an electron in a periodic potential in the presence of a magnetic field

journal-club-presentations

My presentations for Kundaje-lab journal club

manyu90.github.io

misc_scripts_genomics

Scripts for genomics

tf-slim-mnist

MNIST tutorial with Tensorflow Slim (tf-slim)

tf_binding_tensorflow

TF binding implemented with tensorflow flexibility+Keras simplicity

tfmodisco

TF MOtif Discovery from Importance SCOres

virtual-environments

Virtual Environment yml files

yamda

Yet Another Motif Discovery Algorithm