Comments (1)
felixriese
commented on June 9, 2024
Quick-and-dirty solution:
-
Install conda miniforge
-
Change requirements.txt to:
biopython==1.78
comtypes==1.1.7
lxml==4.6.1
matplotlib==3.3.3
networkx==2.5
numpy==1.20.1
pandas==1.2.3
psutil==5.7.3
pyyaml==5.3.1
qdarkstyle==2.8.1
qroundprogressbar==1.0.0
tqdm==4.51.0
SQLAlchemy==1.3.20
SQLAlchemy==1.3.20
fastcore==1.3.5
nbdev==1.1.5
click==7.1.2
- Install alphapept as follows:
conda create --name alphapept python=3.8
conda activate alphapept
cd
git clone https://github.com/MannLabs/alphapept.git
cd alphapept
conda install numpy pandas scikit-learn scipy seaborn pytables h5py
pip install -r requirements.txt
pip install .
conda install numbaTODO: Install two missing packages: PyQt5 and pythonnet.
from alphapept.
Related Issues (20)
- Breaking changes in output files, e.g., column names HOT 4
- FileWatcher setup fails with error AttributeError: module 'streamlit' has no attribute 'script_runner' HOT 1
- Issues with double modifications
- MS1_scans and MS2_scans in .ms_data.hdf don't retain scan structure HOT 2
- Still problems with processing of single timsTOF files HOT 2
- nbdev upgrade breaks CI HOT 1
- streamlit upgrade breaks gui HOT 1
- Documentation: list of the separate alphapept.interface functions needed to run the complete workflow HOT 6
- FASTA downloader broken
- Trying GUI version produces error regarding protobuf HOT 3
- semi-tryptic? (help wanted) HOT 4
- Support for python 3.10
- Request of examples of how to use the functions in matching.py (Match between Run) HOT 2
- Search fails on mzML files? HOT 2
- cannot install pythonnet 2.5.2 in linux HOT 1
- Failure to convert Thermo Ascend files HOT 1
- AlphaPept GUI 0.5.1 Breaking change: The data editor's representation in st.session_state was changed. HOT 3
- A question about guide HOT 2
- Task failed HOT 6
- Not enough disk space for analysis. Linux
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from alphapept.