Comments (2)
Hi Nicole @nt365,
Thank you very much for your interest in Phylo-HMRF. I do apologize for the delay in my reply. Would you please try installing pygco from the source code? Please refer to the instructions in https://github.com/yujiali/pygco to install pygco. If you could not find gco_source from the original link referred to, you could use the source code in the gco_source file folder contained within this repository. There is a copy of the source code of GCO in ./gco_source. Please see the descriptions in the section 'Required pre-installed packages'. After you have installed pygco, please try 'import pygco' in Python. If it works, then please see if running the example command can work.
Please let me know if this helps or if you have any other questions. Many thanks!
Best regards!
Yang Yang
from phylo-hmrf.
Sorry for the delay,
I was able to make it work by replacing line 496 from "labels=pygco.cut_general_graph" to "labels=gco.cut_general_graph".
Thank you!
Nicole
from phylo-hmrf.
Related Issues (14)
- read_state_test.m error HOT 1
- Compatibility with python v3? HOT 1
- Error running on example input HOT 6
- Error on the example input "AttributeError: 'bool' object has no attribute 'keys'"
- Conda easy-ish installation guide HOT 2
- Hi-C contact frequency files - which genome to use?
- test data? HOT 5
- How do I know the correspondence between numbers and states? HOT 1
- random : input of edges and branch length as newick? HOT 1
- Can Phylo-HMRF do pairwise comparison? HOT 3
- About the synteny block HOT 3
- Error using example input HOT 2
- ValueError: shape mismatch HOT 5
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