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Ahmad Lutfi's Projects

awesome-crispr icon awesome-crispr

List of software/websites/databases/other stuff for genome engineering

bioinformatics icon bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

bwa icon bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

catch2 icon catch2

A modern, C++-native, test framework for unit-tests, TDD and BDD - using C++14, C++17 and later (C++11 support is in v2.x branch, and C++03 on the Catch1.x branch)

cbnplot icon cbnplot

Bayesian network plot for the enrichment analysis results

cmake icon cmake

Mirror of CMake upstream repository

cofi icon cofi

Review of the most used filters for similarity search applications, focusing on the different implementations and performance.

cpm.cmake icon cpm.cmake

📦 CMake's missing package manager. A small CMake script for setup-free, cross-platform, reproducible dependency management.

curl icon curl

A command line tool and library for transferring data with URL syntax, supporting DICT, FILE, FTP, FTPS, GOPHER, GOPHERS, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, MQTT, POP3, POP3S, RTMP, RTMPS, RTSP, SCP, SFTP, SMB, SMBS, SMTP, SMTPS, TELNET, TFTP, WS and WSS. libcurl offers a myriad of powerful features

cytoscape icon cytoscape

Cytoscape: an open source platform for network analysis and visualization

dorado icon dorado

A LibTorch Basecaller for Oxford Nanopore Reads

dvc icon dvc

🦉Data Version Control | Git for Data & Models | ML Experiments Management

faltwerk icon faltwerk

A library for spatial exploratory data analysis of protein structures

ganon icon ganon

a read classification tool based on Interleaved Bloom Filters

gemma.cpp icon gemma.cpp

lightweight, standalone C++ inference engine for Google's Gemma models.

gfatools icon gfatools

Tools for manipulating sequence graphs in the GFA and rGFA formats

ggtranscript icon ggtranscript

Visualizing transcript structure and annotation using ggplot2

grafana icon grafana

The open and composable observability and data visualization platform. Visualize metrics, logs, and traces from multiple sources like Prometheus, Loki, Elasticsearch, InfluxDB, Postgres and many more.

hdf5 icon hdf5

Official HDF5® Library Repository

imgui icon imgui

Dear ImGui: Bloat-free Graphical User interface for C++ with minimal dependencies

kedro icon kedro

A Python framework for creating reproducible, maintainable and modular data science code.

libzmq icon libzmq

ZeroMQ core engine in C++, implements ZMTP/3.1

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