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augfmri

Python implementation of Functional Magnetic Resonance Imaging data augmentation through conditional ICA (MICCAI2021-Oral)

automated-machine-learning-with-autokeras

Automated Machine Learning with Auto-Keras, Published by Packt

brainprep

Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.

code_snippets

dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

easyfmri

fill_voids

Fill holes in binary 2D & 3D images fast.

gan-mri

Code repository for Frontiers article 'Generative Adversarial Networks for Image-to-Image Translation on Multi-Contrast MR Images - A Comparison of CycleGAN and UNIT'

intro-to-r-flipped

lc_rsfmri_tools_matlab

resting-state fmri tools

mask2boundary

Takes a binary mask in Niftii format and converts it to a boundary of provided width

mri-to-ct-using-gan

This repository is implementation of MRI-only brain radiotherapy: assessing the dosimetric accuracy of synthetic CT images generated using a deep learning approach

niistat

NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations

pydeface

defacing utility for MRI images

pyradiomics

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics

slicerradiomics

A Slicer extension to provide a GUI around pyradiomics

thinkstats2

Text and supporting code for Think Stats, 2nd Edition

tpot

A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.