Luka Lmelias's Projects
basic walk-throughs for alignment and variant calling from NGS sequencing data
Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk of ARGs from multiple perspectives by using these code.
The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
Managing the Bioinformatics Internship, 2020.
Repository containing Jupyter scripts for MSc Thesis about using Canonical Correlation Analysis in combination with embeddings of MS spectra molecular structures of metabolites.
This repo contains some of the most famous books on Data Engineering
Contains files for the deep learning in genomics primer.
An implementation of Deep Canonical Correlation Analysis (DCCA or Deep CCA) with pytorch.
The Web framework for perfectionists with deadlines.
A group work project that tests our understanding of BLAST, Genetic Data Alignment and Phylogenetic tree construction concepts in genetic data analysis and bioinformatics.
H3ABioNet 16S rDNA diverstity analysis package
A copy starter repo for SQL integration
Config files for my GitHub profile.
Lecture resources for Python for Bioinformatics EANBiT course.
C++ Implementation of PyTorch Tutorials for Everyone
Intro Shell Course Designed as a Precursor for Bioinformatics Courses
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Analysis and benchmarking of mass spectra similarity measures using gnps data set.
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