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blissnp

Step-by-step procedure for the analysis of BLISS and sBLISS datasets. For more information:

cellxgene

An interactive explorer for single-cell transcriptomics data

computational_flow_cytometry

cytopb

For multiplexed imaging (IF, IMC, ...), use of overlap signals to generate cell type maps and interaction signatures.

cytophenograph

Pipeline for flow cytometry anlaysis

diopy

The single-cell data IO between R and Python(Python version)

hyperion

imcsegmentationpipeline

A pixelclassification based multiplexed image segmentation pipeline

phenograph_luglilab

preliminary_data_cariplo2021

IBD and CRC scRNAseq Integration

projectscripts_treg_irf4

RnaSeq Irf4 ko

pyflowqc

python package for QC in flow dimensional flowcytometry

rasle_integration

scatacseq_tcell_satpathy_chang

Reanalysis of scATACseq data from Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion

sp007_sade_feldman

Scanpy Analysis of Public Dataset

sp012_chipseq_script

SP012 ChipSeq

sp017_-scrnaseq_tumor_esophagus

sp018-scrnaseq-pelosi

Single cell analysis for Dott.Pelosi

sp018_cd8_galletti_et_al

CD8 stem-like progenitors and fate commitment

sp024_dimitricrispcas9

Script and files of Project SP024

sp025_analysis

Integration analysis with Scanpy and scRNAseq TME from blueprint

sp028_autoimmunity

SP028 Project

sp039_gbmintegration

Code related to SP039 project. GBM integration of single cell dataset

utility

Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR