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biopython

Official git repository for Biopython (converted from CVS)

circexplorer

A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)

circexplorer2

circular RNA analysis toolset

circlncrnanet

An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs

circrna_finder

Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).

circrnafinder

a tool for identifying circular RNAs using RNA-Seq data

corex

CorEx or "Correlation Explanation" discovers a hierarchy of informative latent factors. This reference implementation has been superseded by other versions below.

demo

geo

giab_latest_release

This repository contains information about latest release from Genome in a Bottle project

legacy-homebrew

:skull: The former home of Homebrew/homebrew (deprecated)

macs

MACS -- Model-based Analysis of ChIP-Seq

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

practice

solarized

precision color scheme for multiple applications (terminal, vim, etc.) with both dark/light modes

sra-tools

SRA Tools

test

just some practice for beginning

the-internet

An example application that captures prominent and ugly functionality found on the web. Perfect for writing automated acceptance tests against.