lucimoore Goto Github PK
Name: Lucille A. Moore
Type: User
Company: Masonic Institute of the Developing Brain, UMN
Location: Portland, Oregon
Name: Lucille A. Moore
Type: User
Company: Masonic Institute of the Developing Brain, UMN
Location: Portland, Oregon
For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.
some default
wrapper to create csv file necessary for file uploads to BrainBox and run curl commands to link uploaded files to associated jsons
correct swapped left-right hemisphere labels in nnUNet segmentations from BIBSNet
some default
The actual pipeline code, based on hcp, for human infants
disk usage audit script for filesystems that filters and sorts by specified thresholds (eg age, size, etc)
Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.
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OHSU Open Science Workshop on tools and methods for building transparency within a lab
Personal website
Jupyter notebooks for tutorials, presentations, and machine learning projects
A registry of publicly available datasets on AWS
Fork this repo for a quick start. If "Project Timeline" or "License" appeared on your nav bar, Look Below!
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