lorde-collab Goto Github PK

aoc-2020

Advent of Code 2020 repo: Written in Go!

bam2gff

bradner lab computation pipeline scripts

chip-seq

chipseqspikeinfree

A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

cicero

CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

cis-x

Search for activating regulatory variants in the tumor genome

csp

validation and detection of heteroresistance in staphylococci and related features using cumulative survival profiling

episomizer

Constuct Extrachromosomal Circular DNA using Whole Genome Sequencing Data

fqlib

Library for manipulating Illumina generated FastQ files

fuzzion

Fuzzy fusion finder for next generation sequencing data.

gpfscode

Data mining and analysis of GPFS client metrics.

lsfcode

Software for managing HPC infrastructure via LSF

phoenix

Phoenix job manager

rnaindel

Somatic indel discovery tool for tumor RNA-Seq data.

rose

ROSE: RANK ORDERING OF SUPER-ENHANCERS

seaseq

Abraham's lab - ChipSeq Pipeline

servertools

Provides user-level validation and assimilation routines for BOINC projects.

sicer2

sicer2

sjcb_python_utils

St Jude Computational Biology Python utility functions

sjcloud-data-transfer-app

Application to securely upload data to and download data from St. Jude Cloud Platform.

teltale

Compute telomeric read fractions in a BAM file.

toil

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

trident

Trident executable source code and tools

xenocp

A cloud-based tool for mouse read cleansing in xenograft samples