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Laura Berkowitz's Projects

kilosort2 icon kilosort2

Fast spike sorting with drift correction for up to a thousand channels

linescan_analysis icon linescan_analysis

Code for development of unsupervised approach to red blood cell analysis from line scans.

ln-model-of-mec-neurons icon ln-model-of-mec-neurons

Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and theta phase information. Used in Hardcastle et al., 2017.

markdown-cv icon markdown-cv

a simple template to write your CV in a readable markdown file and use CSS to publish/print it.

mce icon mce

Analysis of cardiac ultrasound data

nelpy icon nelpy

Neuroelectrophysiology object model and data analysis in Python.

plugin-gui icon plugin-gui

Software for processing, recording, and visualizing multichannel electrophysiology data

position_tracking icon position_tracking

An assortment of jupyter notebooks to track rodent position using deeplabcut.

spykesml icon spykesml

A class for using ML algorithms for spike prediction

w_maze_3d_design icon w_maze_3d_design

3D design files from Robinson et al. 2021 Journal of Neuroscience. Feel free to use and modify. Please reference Robinson et al. 2021 Journal of Neuroscience

zmqplugins icon zmqplugins

Open Ephys GUI plugin for networking using the ZMQ library

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