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calculate_mutational_burden

A lightweight python script to calculate mutational burden.

cheatsheets

Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.

cli

The Docker CLI

cnv

cnvtogenes

Map CNV segment scores to a list of genes

damage-estimator

Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such as transposon based methods and Ultra II FS library preparation from NEB).

dedrm_tools

DeDRM tools for ebooks

delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

dockerfile

Dockerfile about software of bioinformatics

elegantbook

Elegant LaTeX Template for Books

inspiration

My inspiration of ALL AROUND

kubernetes-handbook

Kubernetes中文指南/云原生应用架构实践手册 - https://jimmysong.io/kubernetes-handbook

mutalyzer

HGVS variant nomenclature checker

notes-python

中文 Python 笔记

pymol_scripts

rmate

Remote TextMate 2 implemented as shell script

rnaseq-workflow

A repository for setting up a RNAseq workflow

rstudio

sambamba

Tools for working with SAM/BAM/CRAM data

simple_pytorch2

varscan2

Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2