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adjusttext

A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps.

all-in-one

A reproduction of HuggingGPT based on ChatGLM

alphapulldown

auto-gpt

An experimental open-source attempt to make GPT-4 fully autonomous.

awesome_chinese_medical_nlp

中文医学NLP公开资源整理：术语集/语料库/词向量/预训练模型/知识图谱/命名实体识别/QA/信息抽取/模型/论文/etc

chatgpt-advanced

WebChatGPT: A browser extension that augments your ChatGPT prompts with web results.

chatmed

d-script

A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions

deepclustering

A pytorch implementation of the paper Unsupervised Deep Embedding for Clustering Analysis.

dgraphdta

a novel DTA predition method using graph neural network

driverml

drkg

A knowledge graph and a set of tools for drug repurposing

dssp

The DSSP building software

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

gene2vec

Gene2Vec: Distributed Representation of Genes Based on Co-Expression

gentrl

Generative Tensorial Reinforcement Learning (GENTRL) model

graphene

Pre-trained graph neural network and downstream tasks

gromacs_chinese

linly

Chinese-LLaMA基础模型；ChatFlow中文对话模型；NLP预训练/指令微调数据集

llm-pretrain-finetune

Deepspeed、LLM、Medical_Dialogue、医疗大模型、预训练、微调

markov-molecular-sampling

mdanalysis

MDAnalysis is a Python library to analyze molecular dynamics simulations.

medicalgpt

MedicalGPT: Training Your Own Medical GPT Model with ChatGPT Training Pipeline. 训练医疗大模型，实现了包括增量预训练、有监督微调、RLHF(奖励建模、强化学习训练)和DPO(直接偏好优化)。

mediqa-chat-2023-wanglab

A repository for organizing our submission to the MEDIQA-Chat Tasks @ ACL-ClinicalNLP 2023

molmaker

A tool to create molecule structures from topology information (GROMACS-only)

mts-dialog

A new collection of 1.7k doctor-patient conversations and corresponding clinical notes/summaries.

muse

MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states for spatially resolved transcriptomics data.

neurips19-graph-protein-design

Generative Models for Graph-Based Protein Design

nglview

Jupyter widget to interactively view molecular structures and trajectories

openmmforcefields

CHARMM and AMBER forcefields for OpenMM (with small molecule support)